Publications

2022

• Gonzalez-Olvera, JC; Fiala, R; Pless, RC, 2022: Protonation of Guanine:5-Methylcytosine and Guanine:Cytosine Base Pairs in Duplex Oligodeoxyribonucleotides. CHEMISTRYSELECT 7(30), doi: 10.1002/slct.202200835

2021

• Taveri, G; Hanzel, O; Sedlacek, J; Tousek, J; Nescakova, Z; Michalek, M; Dlouhy, I; Hnatko, M, 2021: Consolidation of Bioglass (R) 45S5 suspension through cold isostatic pressing. CERAMICS INTERNATIONAL 47(3), p. 4090 - 4096, doi: 10.1016/j.ceramint.2020.09.283

2020

• Stackova, L; Russo, M; Muchova, L; Orel, V; Vitek, L; Stacko, P; Klan, P, 2020: Cyanine-Flavonol Hybrids for Near-Infrared Light-Activated Delivery of Carbon Monoxide. CHEMISTRY-A EUROPEAN JOURNAL 26(58), p. 13184 - 13190, doi: 10.1002/chem.202003272
• Zapletal, V; Mladek, A; Melkova, K; Lousa, P; Nomilner, E; Jasenakova, Z; Kuban, V; Makovicka, M; Lanikova, A; Zidek, L; Hritz, J, 2020: Choice of Force Field for Proteins Containing Structured and Intrinsically Disordered Regions. BIOPHYSICAL JOURNAL 118(7), p. 1621 - 1633, doi: 10.1016/j.bpj.2020.02.019
• PEKAŘÍK, V.; PEŠKOVÁ, M.; DUBEN, J.; REMEŠ, M.; HEGER, Z., 2020: Direct fluorogenic detection of palladium and platinum organometallic complexes with proteins and nucleic acids in polyacrylamide gels. SCIENTIFIC REPORTS 10(1), p. 1 - 10, doi: 10.1038/s41598-020-69336-w; FULL TEXT
• PALUŠOVÁ, V.; RENZOVÁ, T.; VERLANDE, A.; VACLOVÁ, T.; MEDKOVÁ, M.; CETLOVÁ, L.; SEDLÁČKOVÁ, M.; HŘÍBKOVÁ, H.; SLANINOVÁ, I.; KRUTÁ, M.; ROTREKL, V.; UHLÍŘOVÁ, H.; KŘÍŽOVÁ, A.; CHMELÍK, R.; VESELÝ, P.; KRAFČÍKOVÁ, M.; TRANTÍREK, L.; SCHINK, K.; ULDRIJAN, S., 2020: Dual Targeting of BRAF and mTOR Signaling in Melanoma Cells with Pyridinyl Imidazole Compounds. CANCERS 12(6), p. 1 - 24, doi: 10.3390/cancers12061516; FULL TEXT
• Malali, S; Chyba, J; Knor, M; Horni, M; Necas, M; Novotny, J; Marek, R, 2020: Zwitterionic Ru(III) Complexes: Stability of Metal-Ligand Bond and Host-Guest Binding with Cucurbit[7]uril. INORGANIC CHEMISTRY 59(14), p. 10185 - 10196, doi: 10.1021/acs.inorgchem.0c01328
• Kuban, V; Macek, P; Hritz, J; Nechvatalova, K; Nedbalcova, K; Faldyna, M; Sebo, P; Zidek, L; Bumba, L, 2020: Structural Basis of Ca2+-Dependent Self-Processing Activity of Repeat-in-Toxin Proteins. MBIO 11(2), doi: 10.1128/mBio.00226-20
• Jurikova, K; Gajarsky, M; Hajikazemi, M; Nosek, J; Prochazkova, K; Paeschke, K; Trantirek, L; Tomaska, L, 2020: Role of folding kinetics of secondary structures in telomeric G-overhangs in the regulation of telomere maintenance inSaccharomyces cerevisiae. JOURNAL OF BIOLOGICAL CHEMISTRY 295(27), p. 8958 - 8971, doi: 10.1074/jbc.RA120.012914
• Doroshenko, I; Bohme, M; Buchholz, A; Simonikova, L; Plass, W; Pinkas, J, 2020: Octanuclear nickel phosphonate core forming extended and molecular structures. CRYSTENGCOMM 22(41), p. 6900 - 6910, doi: 10.1039/d0ce01055c
• Doroshenko, I; Buchholz, A; Bergerova, ED; Plass, W; Pinkas, J, 2020: Heterometallic 3d-4f {Co2Gd4} phosphonates: new members of the potential magnetic cooler family. NEW JOURNAL OF CHEMISTRY 44(2), p. 513 - 521, doi: 10.1039/c9nj05071j
• Brazda, P; Krejcikova, M; Kasiliauskaite, A; Smirakova, E; Klumpler, T; Vacha, R; Kubicek, K; Stefl, R, 2020: Yeast Spt6 Reads Multiple Phosphorylation Patterns of RNA Polymerase II C-Terminal Domain In Vitro. JOURNAL OF MOLECULAR BIOLOGY 432(14), p. 4092 - 4107, doi: 10.1016/j.jmb.2020.05.007

2019

• Sychrovsky, V; Saman, D; Fiala, R; Humpa, O; Sykora, J; Kessler, P; Blechta, V; Dobrev, P; Schraml, J, 2019: Ascorbigen A-NMR identification. MAGNETIC RESONANCE IN CHEMISTRY , doi: 10.1002/mrc.4890
• Kuban, V; Srb, P; Stegnerova, H; Padrta, P; Zachrdla, M; Jasenakova, Z; Sanderova, H; Vitovska, D; Krasny, L; Koval, T; Dohnalek, J; Ziemska-Legiecka, J; Grynberg, M; Jarnot, P; Gruca, A; Jensen, MR; Blackledge, M; Zidek, L, 2019: Quantitative Conformational Analysis of Functionally Important Electrostatic Interactions in the Intrinsically Disordered Region of Delta Subunit of Bacterial RNA Polymerase. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 141(42), p. 16817 - 16828, doi: 10.1021/jacs.9b07837
• Krafcikova, M; Dzatko, S; Caron, C; Granzhan, A; Fiala, R; Loja, T; Teulade-Fichou, MP; Fessl, T; Hansel-Hertsch, R; Mergny, JL; Foldynova-Trantirkova, S; Trantirek, L, 2019: Monitoring DNA-Ligand Interactions in Living Human Cells Using NMR Spectroscopy. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 141(34), p. 13281 - 13285, doi: 10.1021/jacs.9b03031
• Brazda, P; Sedo, O; Kubicek, K; Stefl, R, 2019: Efficient and robust preparation of tyrosine phosphorylated intrinsically disordered proteins. BIOTECHNIQUES 67(1), p. 16 - 22, doi: 10.2144/btn-2019-0033
• Harnos, J; Canizal, MCA; Jurasek, M; Kumar, J; Holler, C; Schambony, A; Hanakova, K; Bernatik, O; Zdrahal, Z; Gomoryova, K; Gybel, T; Radaszkiewicz, TW; Kravec, M; Trantirek, L; Rynes, J; Dave, Z; Fernandez-Llamazares, AI; Vacha, R; Tripsianes, K; Hoffmann, C; Bryja, V, 2019: Dishevelled-3 conformation dynamics analyzed by FRET-based biosensors reveals a key role of casein kinase 1. NATURE COMMUNICATIONS 10, doi: 10.1038/s41467-019-09651-7
• Vykoukal, V; Halasta, V; Babiak, M; Bursik, J; Pinkas, J, 2019: Morphology Control in AgCu Nanoalloy Synthesis by Molecular Cu(I) Precursors. INORGANIC CHEMISTRY 58(1), p. 15246 - 15254, doi: 10.1021/acs.inorgchem.9b02172
  (TITAN)
• Hanakova, K; Bernatik, O; Kravec, M; Micka, M; Kumar, J; Harnos, J; Ovesna, P; Paclikova, P; Radsetoulal, M; Potesil, D; Tripsianes, K; Cajanek, L; Zdrahal, Z; Bryja, V, 2019: Comparative phosphorylation map of Dishevelled 3 links phospho-signatures to biological outputs. CELL COMMUNICATION AND SIGNALING 17(1), doi: 10.1186/s12964-019-0470-z
• Munster, L; Fojtu, M; Capakova, Z; Vaculovic, T; Tvrdonova, M; Kuritka, I; Masarik, M; Vicha, J, 2019: Selectively Oxidized Cellulose with Adjustable Molecular Weight for Controlled Release of Platinum Anticancer Drugs. BIOMACROMOLECULES 20(4), p. 1623 - 1634, doi: 10.1021/acs.biomac.8b01807
• Treml, J; Lelakova, V; Smejkal, K; Paulickova, T; Labuda, S; Granica, S; Havlik, J; Jankovska, D; Padrtova, T; Hosek, J, 2019: Antioxidant Activity of Selected Stilbenoid Derivatives in a Cellular Model System. BIOMOLECULES 9(9), doi: 10.3390/biom9090468

2018

• Kollhammerova, I; Babiak, M; Necas, M; Taborsky, P; Kucera, J; Pinkas, J, 2018: Alumazene Reactivity with Quinolinols - Addition and Substitution Reactions on the Al3N3 Ring. ACTA CHIMICA SLOVENICA 65(4), p. 955 - 963, doi: 10.17344/acsi.2018.4624
• Melkova, K; Zapletal, V; Jansen, S; Nomilner, E; Zachrdla, M; Hritz, J; Novacek, J; Zweckstetter, M; Jensen, MR; Blackledge, M; Zidek, L, 2018: Functionally specific binding regions of microtubule-associated protein 2c exhibit distinct conformations and dynamics. JOURNAL OF BIOLOGICAL CHEMISTRY 293(34), p. 13297 - 13309, doi: 10.1074/jbc.RA118.001769
• Podhorsky, J; Murauskas, T; Hegemann, C; Graf, D; Fischer, T; Babiak, M; Pinkas, J; Plausinaitiene, V; Mathur, S; Abrutis, A; Moravec, Z, 2018: Preparation of Heteroleptic Tin(IV) N,O-beta-Heteroarylalkenolate Complexes and Their Properties as PI-MOCVD Precursors for SnO2 Deposition. EUROPEAN JOURNAL OF INORGANIC CHEMISTRY (46), p. 5027 - 5035, doi: 10.1002/ejic.201800913
• Taveri, G; Grasso, S; Gucci, F; Tousek, J; Dlouhy, I, 2018: Bio-Inspired Hydro-Pressure Consolidation of Silica. ADVANCED FUNCTIONAL MATERIALS 28(48), doi: 10.1002/adfm.201805794
• Spackova, N; Trosanova, Z; Sebesta, F; Jansen, S; Burda, JV; Srb, P; Zachrdla, M; Zidek, L; Kozelka, J, 2018: Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants. PHYSICAL CHEMISTRY CHEMICAL PHYSICS 20(18), p. 12664 - 12677, doi: 10.1039/c7cp08623g
• Doroshenko, I; Babiak, M; Buchholz, A; Gorls, H; Plass, W; Pinkas, J, 2018: New molecular heptanuclear cobalt phosphonates: synthesis, structures and magnetic properties. NEW JOURNAL OF CHEMISTRY 42(12), p. 9568 - 9577, doi: 10.1039/c8nj00902c
• Dzatko, S; Krafcikova, M; Hansel-Hertsch, R; Fessl, T; Fiala, R; Loja, T; Krafcik, D; Mergny, JL; Foldynova-Trantirkova, S; Trantirek, L, 2018: Evaluation of the Stability of DNA i-Motifs in the Nuclei of Living Mammalian Cells. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION 57(8), p. 2165 - 2169, doi: 10.1002/anie.201712284
• Evangelidis, T; Nerli, S; Novacek, J; Brereton, AE; Karplus, PA; Dotas, RR; Venditti, V; Sgourakis, NG; Tripsianes, K, 2018: Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra. NATURE COMMUNICATIONS 9, doi: 10.1038/s41467-017-02592-z
• Doroshenko, I; Babiak, M; Buchholz, A; Tucek, J; Plass, W; Pinkas, J, 2018: Hexanuclear iron(III) alpha-aminophosphonate: synthesis, structure, and magnetic properties of a molecular wheel. NEW JOURNAL OF CHEMISTRY 42(3), p. 1931 - 1938, doi: 10.1039/c7nj03606j

2017

• Kejik, M; Moravec, Z; Barnes, CE; Pinkas, J, 2017: Hybrid microporous and mesoporous organosilicate covalent polymers with high porosity. MICROPOROUS AND MESOPOROUS MATERIALS 240, p. 205 - 215, doi: 10.1016/j.micromeso.2016.11.012
• Otrusinova, O; Demo, G; Padrta, P; Jasenakova, Z; Pekarova, B; Gelova, Z; Szmitkowska, A; Kaderavek, P; Jansen, S; Zachrdla, M; Klumpler, T; Marek, J; Hritz, J; Janda, L; Iwai, H; Wimmerova, M; Hejatko, J; Zidek, L, 2017: Conformational dynamics are a key factor in signaling mediated by the receiver domain of a sensor histidine kinase from Arabidopsis thaliana. JOURNAL OF BIOLOGICAL CHEMISTRY 292(42), p. 17525 - 17540, doi: 10.1074/jbc.M117.790212
• Jasnovidova, O; Krejcikova, M; Kubicek, K; Stefl, R, 2017: Structural insight into recognition of phosphorylated threonine-4 of RNA polymerase II C-terminal domain by Rtt103p. EMBO REPORTS 18(6), p. 906 - 913, doi: 10.15252/embr.201643723
• Styskalik, A; Babiak, M; Machac, P; Relichova, B; Pinkas, J, 2017: New Adamantane-like Silicophosphate Cage and Its Reactivity toward Tris(pentafluorophenyl)borane. INORGANIC CHEMISTRY 56(17), p. 10699 - 10705, doi: 10.1021/acs.inorgchem.7b01572
• Srb, P; Novacek, J; Kaderavek, P; Rabatinova, A; Krasny, L; Zidkova, J; Bobalova, J; Sklenar, V; Zidek, L, 2017: Triple resonance NMR relaxation experiments for studies of intrinsically disordered proteins. JOURNAL OF BIOMOLECULAR NMR 69(3), p. 133 - 146, doi: 10.1007/s10858-017-0138-1
• Lousa, P; Nedozralova, H; Zupa, E; Novacek, J; Hritz, J, 2017: Phosphorylation of the regulatory domain of human tyrosine hydroxylase 1 monitored using non-uniformly sampled NMR. BIOPHYSICAL CHEMISTRY 223, p. 25 - 29, doi: 10.1016/j.bpc.2017.01.003
• Jansen, S; Melkova, K; Trosanova, Z; Hanakova, K; Zachrdla, M; Novacek, J; Zupa, E; Zdrahal, Z; Hritz, J; Zidek, L, 2017: Quantitative mapping of microtubule-associated protein 2c (MAP2c) phosphorylation and regulatory protein 14-3-3 zeta-binding sites reveals key differences between MAP2c and its homolog Tau. JOURNAL OF BIOLOGICAL CHEMISTRY 292(16), p. 6715 - 6727, doi: 10.1074/jbc.M116.771097
• Jasnovidova, O; Klumpler, T; Kubicek, K; Kalynych, S; Plevka, P; Stefl, R, 2017: Structure and dynamics of the RNAPII CTDsome with Rtt103. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 114(42), p. 11133 - 11138, doi: 10.1073/pnas.1712450114
• Zachrdla, M; Padrta, P; Rabatinova, A; Sanderova, H; Barvik, I; Krasny, L; Zidek, L, 2017: Solution structure of domain 1.1 of the sigma(A) factor from Bacillus subtilis is preformed for binding to the RNA polymerase core. JOURNAL OF BIOLOGICAL CHEMISTRY 292(28), p. 11610 - 11617, doi: 10.1074/jbc.M117.784074

2016

• Yadav, DK; Lukaysky, PJ, 2016: NMR solution structure determination of large RNA-protein complexes. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 97, p. 57 - 81, doi: 10.1016/j.pnmrs.2016.10.001
• Marvanova, P; Padrtova, T; Pekarek, T; Brus, J; Czernek, J; Mokry, P; Humpa, O; Oravec, M; Jampilek, J, 2016: Synthesis and Characterization of New 3-(4-Arylpiperazin-1-yl)-2-hydroxypropyl 4-Propoxybenzoates and Their Hydrochloride Salts. MOLECULES 21(6), doi: 10.3390/molecules21060707
• Kaderavek, P; Zapletal, V; Fiala, R; Srb, P; Padrta, P; Precechtelova, JP; Soltesova, M; Kowalewski, J; Widmalm, G; Chmelik, J; Sklenar, V; Zidek, L, 2016: Spectral density mapping at multiple magnetic fields suitable for C-13 NMR relaxation studies. JOURNAL OF MAGNETIC RESONANCE 266, p. 23 - 40, doi: 10.1016/j.jmr.2016.02.016
• Zlobina, M; Sedo, O; Chou, MY; Slepankova, L; Lukavsky, PJ, 2016: Efficient large-scale preparation and purification of short single-stranded RNA oligonucleotides. BIOTECHNIQUES 60(2), p. 75 - 83, doi: 10.2144/000114383

2015

• MacRaild, CA; Zachrdla, M; Andrew, D; Krishnarjuna, B; Novacek, J; Zidek, L; Sklenar, V; Richards, JS; Beeson, JG; Anders, RF; Norton, RS, 2015: Conformational Dynamics and Antigenicity in the Disordered Malaria Antigen Merozoite Surface Protein 2. PLOS ONE 10(3), doi: 10.1371/journal.pone.0119899